PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00001012-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 314aa    MW: 34046 Da    PI: 8.1197
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00001012-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.32.4e-12100142854
                         HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          Er RR+++++ f++L  llP++     +K +K++i+ +Av YIk L
  WALNUT_00001012-RA 100 TERERRKKMRNMFANLHALLPQL----PPKADKSTIVDEAVSYIKTL 142
                         6*********************6....39****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.06E-1591154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.68792142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-1497153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.18E-1297147No hitNo description
PfamPF000101.0E-9100142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-8100148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2602.1E-4233290No hitNo description
CDDcd048732.76E-4236275No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MSEGGEGIGH ESFLWENQSW AFSNSDNSAG SEGKSSKKLP VSSSNSQIEI GAKEVALPPS  60
KKKRGRGSVG KNGNASTGGD QGKGEGKGGG ESDHDIHIWT ERERRKKMRN MFANLHALLP  120
QLPPKADKST IVDEAVSYIK TLHHTLQKLQ KQKLERLQGG AASTFGFESP ILISQRLSSD  180
SREAFLADQG SSNNLGAVTA NNSYSNPLSA SLRYPVNFET WTSSNVVLNI CGEEAQISVC  240
SSTKPGLLTT ICYVLEKHRI EVVSAHINSD SNRSMYNIHA RVSGASNHQF QEPAAFPVEE  300
IYKLAAGEIM LWVS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002282369.11e-135PREDICTED: transcription factor bHLH95
TrEMBLA5B4T91e-135A5B4T9_VITVI; Putative uncharacterized protein
STRINGVIT_03s0063g00170.t011e-134(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47733358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.19e-49bHLH family protein